Reference Ingest Guides (RIGs)¶
This page contains an index of all Reference Ingest Guides available in this repository.
About RIGs¶
Reference Ingest Guides (RIGs) are structured documents that describe the scope, rationale, and modeling approach for ingesting content from an external source to a data repository compliant with the Biolink Model.
Each RIG contains:
- Source Information: Details about the data source, including access locations, formats, and terms of use
- Ingest Information: What content is included/excluded and why, including relevant files and filtering criteria
- Target Information: How the data is modeled in the output graph, including edge and node types
- Provenance Information: Contributors and related artifacts
For guidance on creating new RIGs, see the RIG Creation Guide.
Available RIGs¶
| InfoRes ID | Source Name | YAML | Markdown |
|---|---|---|---|
| infores:chembl | ChEMBL Reference Ingest Guide | chembl-rig.yaml | chembl-rig.md |
| infores:ctd | CTD Resource Ingest Guide | ctd_rig.yaml | ctd_rig.md |
| infores:multiomics-clinicaltrials | Multiomics Clinical Trials Knowledge Provider (CTKP) Reference Ingest Guide | ctkp_rig.yaml | ctkp_rig.md |
| infores:diseases | Jensen Lab DISEASES Database Reference Ingest Guide | diseases_rig.yaml | diseases_rig.md |
| infores:gene2phenotype | EBI Gene2Phenotype Reference Ingest Guide | gene2phenotype-rig.yaml | gene2phenotype-rig.md |
| infores:gocam | Gene Ontology Causal Activity Models (GO-CAM) Reference Ingest Guide | gocam-rig.yaml | gocam-rig.md |
| infores:goa | GO Annotations (GOA) Reference Ingest Guide | goa-rig.yaml | goa-rig.md |
| infores:hpo-annotations | Human Phenotype Ontology Annotations | hpo-annotations_rig.yaml | hpo-annotations_rig.md |
| infores:panther | Panther Gene Orthology and Annotation RIG | panther-rig.yaml | panther-rig.md |
| infores:semmeddb | SemMedDB Minimal Reference Ingest Guide (RIG) | semmeddb_rig.yaml | semmeddb_rig.md |
| Unknown | Unknown | sider_rig.yaml | sider_rig.md |
| infores:signor | SIGnaling Network Open Resource (Signor) Reference Ingest Guide | signor-rig.yaml | signor-rig.md |
| infores:ttd | Therapeutic Target Database (TTD) Reference Ingest Guide | ttd-rig.yaml | ttd-rig.md |