Reference Ingest Guides (RIGs)¶
This page contains an index of all Reference Ingest Guides available in this repository.
About RIGs¶
Reference Ingest Guides (RIGs) are structured documents that describe the scope, rationale, and modeling approach for ingesting content from an external source to a data repository compliant with the Biolink Model.
Each RIG contains:
- Source Information: Details about the data source, including access locations, formats, and terms of use
- Ingest Information: What content is included/excluded and why, including relevant files and filtering criteria
- Target Information: How the data is modeled in the output graph, including edge and node types
- Provenance Information: Contributors and related artifacts
For guidance on creating new RIGs, see the RIG Creation Guide.
Available RIGs¶
| InfoRes ID | Source Name | YAML | Markdown |
|---|---|---|---|
| infores:agrkb | Alliance of Genome Resources (AGR) Reference Ingest Guide | alliance_rig.yaml | alliance_rig.md |
| infores:bgee | BGee Ingest Guide | bgee_rig.yaml | bgee_rig.md |
| infores:bindingdb | BindingDb | bindingdb_rig.yaml | bindingdb_rig.md |
| infores:chembl | ChEMBL Reference Ingest Guide | chembl_rig.yaml | chembl_rig.md |
| infores:cohd | Columbia Open Health Data | cohd_rig.yaml | cohd_rig.md |
| infores:ctd | CTD Resource Ingest Guide | ctd_rig.yaml | ctd_rig.md |
| infores:multiomics-clinicaltrials | Multiomics Clinical Trials Knowledge Provider (CTKP) Reference Ingest Guide | ctkp_rig.yaml | ctkp_rig.md |
| infores:multiomics-drugapprovals | Multiomics Drug Approvals Knowledge Provider (DAKP) Reference Ingest Guide | dakp_rig.yaml | dakp_rig.md |
| infores:dgidb | Drug-Gene Interaction Database (DGIdb) Reference Ingest Guide | dgidb_rig.yaml | dgidb_rig.md |
| infores:diseases | Jensen Lab DISEASES Database Reference Ingest Guide | diseases_rig.yaml | diseases_rig.md |
| infores:drug-repurposing-hub | Drug-Repurposing Hub Reference Ingest Guide | drug_rep_hub_rig.yaml | drug_rep_hub_rig.md |
| infores:gene2phenotype | EBI Gene2Phenotype Reference Ingest Guide | gene2phenotype_rig.yaml | gene2phenotype_rig.md |
| infores:geneticskp | GeneticsKP Reference Ingest Guide | geneticskp_rig.yaml | geneticskp_rig.md |
| infores:gocam | Gene Ontology Causal Activity Models (GO-CAM) Reference Ingest Guide | go_cam_rig.yaml | go_cam_rig.md |
| infores:goa | GO Annotations (GOA) Reference Ingest Guide | goa_rig.yaml | goa_rig.md |
| infores:gtopdb | The IUPHAR/BPS Guide to PHARMACOLOGY (GtoPdb) Reference Ingest Guide | gtopdb_rig.yaml | gtopdb_rig.md |
| infores:hpo-annotations | Human Phenotype Ontology Annotations | hpoa_rig.yaml | hpoa_rig.md |
| infores:icees-kg | ICEES (Integrated Clinical and Environmental Exposures Service) | icees_rig.yaml | icees_rig.md |
| infores:intact | IntAct Reference Ingest Guide | intact_rig.yaml | intact_rig.md |
| infores:ncbi-gene | NCBI Gene Reference Ingest Guide | ncbi_gene_rig.yaml | ncbi_gene_rig.md |
| infores:panther | Panther Gene Orthology and Annotation RIG | panther_rig.yaml | panther_rig.md |
| infores:pathbank | PathBank Reference Ingest Guide (RIG) | pathbank_rig.yaml | pathbank_rig.md |
| infores:semmeddb | SemMedDB Minimal Reference Ingest Guide (RIG) | semmeddb_rig.yaml | semmeddb_rig.md |
| infores:sider | SIDER Reference Ingest Guide | sider_rig.yaml | sider_rig.md |
| infores:signor | SIGnaling Network Open Resource (Signor) Reference Ingest Guide | signor_rig.yaml | signor_rig.md |
| infores:text-mining-provider-cooccurrence | Text Mining Knowledge Provider (TMKP) | tmkp_rig.yaml | tmkp_rig.md |
| infores:ttd | Therapeutic Target Database (TTD) Reference Ingest Guide | ttd_rig.yaml | ttd_rig.md |
| infores:ubergraph | Ubergraph Ontological Hierarchy Reference Ingest Guide | ubergraph_rig.yaml | ubergraph_rig.md |